Journal archives for December 2022

December 11, 2022

What is it for?

The complexity of structures, textures, and colors on the surface of an insect are of obvious interest just for their elegance and beauty. Of course you think about that as you also explore these features for the more practical objective of making an ID. Two considerations for entomologists, which are irrelevant to the insect; of course they know they are beautiful, and they ID each other without reference to measuring wing venation and the like.

Another thing to think about, easy to forget when looking at dead specimens, is the fact that in the living insect, most of the tiny details are in the service of some function. So a friend asked: Why are the eyes of hoverflies hairy? I can't find an answer. Could it just be that hairiness is incidental to the formation of the eye? It seems not; some syrphid eyes are absolutely bare, others are carpeted with hair.


My own main concern is bees, in particular Andrena. In keys, you are asked to look at the pygidial plate, a flat surface that might be smooth, or patterned in many ways. Having recently discovered this trait, I have paid close attention to its diagnostic value. But as much as I like to think of myself as curious ... it had not occurred to me to wonder about the adaptive value of this feature. Until it was pointed out to me (thank you WIll Peterman) that the pygidial plate is a digging/smoothing tool, used by ground-nesting bees to form and water-proof brood cells. As far as the specific advantages of the different forms of pygidial plates ... a new thing to consider.

Posted on December 11, 2022 03:15 AM by cappaert cappaert | 1 comment | Leave a comment

December 15, 2022

Andrena key in Identikit, a trial

The key: Identikit key: Select Andrena Examples
This is NOT a useful diagnostic resource. It is a proof-of-concept experiment with Identikit software, a possible alternative to the xml-based interactive keys of DiscoverLife. I've populated it with an arbitrary set of 7 taxa, and a subset of characters used in the DiscoverLife Andrena key.



Background:
Andrena is kind of a worst case for making definite IDs, because there are so many species, which often differ only in subtle ways. There are a couple of resources that you might use to ID a specimen.

You can consult dichotomous keys in the primary literature, which are spread among many hard-to-access publications (that may be out of date), and rife with complicated terminology and comparisons to exemplars that you do not have in a collection. This is the conservative path, but impractical for most.

Or you can use the key in DiscoverLife, which is far friendlier to non-specialists. Criticially, it is interactive, so that a diagnosis does not hinge on a correct call for each step of a dichotomous key. The design favors plain English, and descriptive illustrations and photos. In most cases, species pages have specimen photos and detailed descriptions from primary literature, and distribution maps. The DL Andrena key does have flaws, to be expected in a resource attempting to accurately discriminate among >500 US species. But at the moment, it is probably the best first step to get at least close to ID.

However, the software behind the DL keys is suboptimal. To get a sense of what I mean, compare the
Osmia key from DL,
to a much more elegant interface in the Osmia key from ExoticBeeID*. The latter is cleaner, more efficient and intuitive, and offers trait and specimen images at hi res. A down side: it uses Lucid software, which is expensive. In my sample Andrena key, I've used Identikit, which is open source and free. A long term goal would be to move keys like DL's to this kind of platform.

The DL authors - I've discussed with Sam Droege and Clare Maffei - are amenable to a new kind of deployment. There are a couple of impediments. The most obvious is that re-formatting a key with 520 taxa and 100 traits would be a crazy amount of work. A second problem is about the long term - the current xml-based platform is somewhat future-proofed, maintained by USGS, on a stable server space. Identikit software is written in javascript and deployed on github. What would be needed to assure its performance as software evolves and bugs come up? I don't know, but I am scouting for info on this.

If you have read this far (all 3 of you), my current take on this: Keys like Identikit or Lucid will win out over older formats, sooner or later. I can generate such keys, and I likely will for a bee genus without the mountain of data in the DL Andrena key. I am also interested in using this software for any other taxon where I have enough information and imagery to do a credible job. I've done this for the draft Ceratina of the Pacific Northwest. A reach, but worth contemplating: Andrena subgenus, perhaps based on the subset represented in OR/WA specimens in hand (collections of Quamash EcoResearch and Institute for Applied Ecology), and in other material I can get from the Eastern Ecological Science Center (Sam Droege, Clare Maffei) or other projects. Stay tuned.


  • Neither key is anywhere near complete--there are ~150 species of Osmia in the US. Exotic bee ID is limited in scope, with 29 species. DL is getting closer to comprehensive in a draft version of the key, with 131 species, which incorporates western species.
Posted on December 15, 2022 06:35 PM by cappaert cappaert | 0 comments | Leave a comment

December 28, 2022

Guide to the DiscoverLife Andrena key

I have spent weeks of my life in the DiscoverLife Andrena key. It is a great resource but far short of a slam dunk for ID of the 521 Andrena species in the guide. One of the limitations is the lag in scoring. Ideally, each species in the key is associated with trait conditions. Species X has long fovea, a ridged pygidial plate, etc, for dozens of traits. But for rarer taxa, these traits are unrecorded, or scored for a wide range. E.g., species Y has moderate OR long OR very long fovea. This leads to many false positives. The solution is for a highly qualified taxonomist with a vast collection to spend months ironing this out. Or more likely, to chip away at it as resources are available.

A second limitation is the user's level of knowledge about how traits are defined. I can help with this by adding explanatory trait images to the DL key. But these images are small, and often insufficient to get the user to a place of confidence when deciding on trait conditions.

So I created a page: Andrena deconstructed: A photo guide to the characters of the DiscoverLife Andrena key

Anatomy discussed:

Posted on December 28, 2022 12:33 AM by cappaert cappaert | 0 comments | Leave a comment